Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs12339392 | chr9:26804802 | T/C | 4.35E-5 | 393 | 15.17 | 16.3 | 13 | KM Plot |
| LGG | rs12339656 | chr9:23875689 | A/C | 3.0E-6 | 407 | 19.2 | 12.17 | 15.33 | KM Plot |
| LGG | rs12347147 | chr9:17859223 | A/G | 8.51E-6 | 407 | 15.93 | 11.6 | 0 | KM Plot |
| LGG | rs12350715 | chr9:24350222 | A/G | 7.85E-5 | 407 | 15.17 | 16.2 | 18.57 | KM Plot |
| LGG | rs12352853 | chr9:26804941 | C/T | 4.35E-5 | 393 | 15.17 | 16.3 | 13 | KM Plot |
| LGG | rs12354710 | chr10:1114020 | C/T | 2.7E-8 | 391 | 15.95 | 14.77 | 8.43 | KM Plot |
| LGG | rs12375809 | chr9:33991179 | G/A | 6.44E-6 | 404 | 15.37 | 16.38 | 6.13 | KM Plot |
| LGG | rs12403146 | chr1:236513139 | C/T | 0.000127 | 406 | 15.37 | 16.28 | 4 | KM Plot |
| LGG | rs12409603 | chr1:236512858 | T/C | 0.000127 | 406 | 15.37 | 16.28 | 4 | KM Plot |
| LGG | rs12423631 | chr12:132606886 | C/T | 0.000206 | 402 | 16.23 | 13.53 | 8.77 | KM Plot |
| LGG | rs12425153 | chr12:69713085 | T/C | 0.000207 | 405 | 14.95 | 14.9 | 17.87 | KM Plot |
| LGG | rs12485992 | chr3:100916782 | G/C | 2.3E-7 | 406 | 15.67 | 14.98 | 10.07 | KM Plot |
| LGG | rs12493893 | chr3:100937908 | T/C | 1.43E-5 | 406 | 15.57 | 15.15 | 11.7 | KM Plot |
| LGG | rs12497759 | chr3:100927586 | C/G | 2.28E-7 | 407 | 15.63 | 14.98 | 10.07 | KM Plot |
| LGG | rs12517691 | chr5:155960169 | G/T | 5.13E-6 | 403 | 15.6 | 15.23 | 15.37 | KM Plot |